Active Recovery: A Practical Guide

Your Microbiome, Your Momentum
Your gut hosts trillions of microbes that help digest food, protect the gut lining, train the immune system, and influence energy, mood, and recovery. When this community shifts out of balance—called dysbiosis—you may notice bloating, irregular stools, fatigue, food sensitivities, and slower training or rehab progress (Cleveland Clinic, 2024; Cleveland Clinic, 2023). A balanced microbiome supports steadier digestion, calmer inflammation, and better sleep—key ingredients for rebuilding strength and resilience.
Why athletes and injury patients should care: inflammation, pain, and poor sleep can push the gut off course, and an imbalanced gut can, in turn, make soreness and recovery feel harder (Better Health Channel, 2023).
How Imbalance Starts (and Why It Sticks)
Dysbiosis isn’t one “bad bug”—it’s the conditions that let less-helpful bacteria dominate.
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A diet high in sugar and ultra-processed foods Is Low in fiber and often high in additives, which disadvantages beneficial species (Cleveland Clinic, 2023; Healthline, n.d.).
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Antibiotics and some medications: Often necessary, but they can reduce helpful bacteria and open space for overgrowth (Cleveland Clinic, 2024).
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Stress and short sleep: Through the gut–brain axis, both can alter motility, permeability, and immune signals (Better Health Channel, 2023; Northwestern Medicine, n.d.).
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Alcohol and environmental toxins: Can irritate the gut lining and disrupt microbial balance (U.S. Department of Agriculture, 2025).
Over time, these factors reduce microbial diversity—a key marker of resilience (UMass Memorial Health, n.d.). The upside: diet changes can quickly shift the microbiome, which is encouraging for anyone trying to rebound from injury or heavy training (Ferranti, 2014).
SIBO: When Traffic Jams Upstream
Small Intestinal Bacterial Overgrowth (SIBO) occurs when excess bacteria build up in the small intestine, which normally has relatively low counts. SIBO can cause bloating, abdominal pain, diarrhea, weight loss, and nutrient problems—issues that can undercut training and rehab if not addressed (Mayo Clinic, 2024a).
Treatment often includes antibiotics plus nutrition strategies, but long-term success depends on fixing underlying causes (e.g., slow motility, structural issues) and then carefully re-expanding fibers to rebuild a resilient microbiome (Mayo Clinic, 2024b).
Everyday Levers That Rebalance the Gut
These simple moves fit busy schedules and deliver steady results:
A. Eat fiber like it’s a habit, not a hero moment
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Aim for a plant-forward pattern: vegetables, fruit, beans/lentils, and whole grains (oats, barley, brown rice, and quinoa).
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Fiber feeds beneficial microbes that produce short-chain fatty acids (SCFAs) such as butyrate, which help protect the gut lining and may calm systemic inflammation (Ferranti, 2014; Healthline, n.d.).
B. Add one fermented food most days
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Options: yogurt or kefir with live cultures, kimchi, sauerkraut, or kombucha.
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Check labels for “live and active cultures” since not all fermented foods contain live microbes after processing (Healthline, n.d.; Cleveland Clinic Magazine, 2023).
C. Tame ultra-processed foods
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Swap sugary drinks for water or unsweetened tea, choose whole-grain staples, and keep packaged snacks as occasional treats (Cleveland Clinic, 2023).
D. Protect sleep and decompress stress
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Target 7–9 hours with a consistent wind-down.
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Try 5 minutes of slow breathing (about 4–6 breaths/min) before bed; add 20–30 minutes of walking most days, plus two quick strength sessions weekly (Better Health Channel, 2023).
E. Use medications wisely—with your clinician
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Never stop a prescription on your own. If antibiotics are necessary, ask about food-first support and whether a short-term probiotic suits your situation (Cleveland Clinic, 2024).
F. Don’t forget basic hygiene
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Wash hands, rinse produce, and avoid kitchen cross-contamination to limit exposure to harmful bacteria (GoodRx, 2022).
Fueling for Training Days (and Rehab Weeks)
You don’t need a perfect plan—you need a repeatable one.
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Breakfast: Oats + kefir or yogurt + berries + nuts (fiber + live cultures).
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Lunch: Whole-grain bowl (quinoa/barley) + beans/lentils + colorful veggies; spoon of kimchi/sauerkraut.
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Dinner: Slow-cooker chili or lentil curry; big salad with olive oil; baked potato (cool leftovers to add some resistant starch).
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Snacks: Fruit + nut butter, carrots + hummus, plain popcorn, or a small kefir smoothie.
Small, steady steps reshape your microbiome—an advantage for digestion, energy, and recovery (Penn State Health, 2018).
Clinician’s Corner: Dual-Scope Insights for Injury, Rehab, and the Gut
Alexander Jimenez, DC, APRN, FNP-BC (El Paso, TX) integrates nurse-practitioner primary care and chiropractic methods. In patients recovering from work injuries, sports strains, personal injuries, and MVAs, his team coordinates:
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Dual-scope diagnosis and imaging when indicated (X-ray/MRI) to clarify joint, nerve, and soft-tissue pain drivers.
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Conservative therapies such as spinal adjustments (when appropriate), targeted exercise, massage therapy, and acupuncture to modulate pain and stress.
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Nutrition and lifestyle coaching—plant diversity, live-culture foods, sleep, and stress skills—to stabilize the gut while tissues heal.
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Medical-legal documentation (for injury cases) with structured notes and functional measures to support claims and authorizations.
Clinical observation (Jimenez): Patients with spine pain and poor sleep often report IBS-like flares. Pairing graded movement and manual therapy with a simple fiber-first meal pattern and one daily fermented food tends to reduce bloating and improve energy within weeks as sleep improves (Jimenez, n.d.; Jimenez, 2025).
When to Call a Clinician Now
Seek care promptly for unintended weight loss, blood in stool, fever, severe or night-time symptoms, or a history of GI surgery or inflammatory bowel disease. Ask about evaluation—including possible SIBO testing—and a tailored plan (Mayo Clinic, 2024a).
Bottom Line
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Dysbiosis is common and usually fixable with realistic routines.
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Focus on a plant-forward baseline, add one fermented food most days, reduce ultra-processed choices, and protect sleep and stress.
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If pain, injury, or SIBO complicate the picture, a coordinated care team can blend diagnostics, hands-on therapy, and medical-legal documentation with gut-supportive coaching—so you can train, work, and heal with fewer setbacks.
References
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Small intestinal bacterial overgrowth (SIBO) – Symptoms & causes. (2024a). Mayo Clinic. https://www.mayoclinic.org/diseases-conditions/small-intestinal-bacterial-overgrowth/symptoms-causes/syc-20370168
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Small intestinal bacterial overgrowth (SIBO) – Diagnosis & treatment. (2024b). Mayo Clinic. https://www.mayoclinic.org/diseases-conditions/small-intestinal-bacterial-overgrowth/diagnosis-treatment/drc-20370172
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Dysbiosis: What it is, symptoms, causes, treatment & diet. (2024). Cleveland Clinic. https://my.clevelandclinic.org/health/diseases/dysbiosis
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What is your gut microbiome? (2023). Cleveland Clinic. https://my.clevelandclinic.org/health/body/25201-gut-microbiome
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Gut health. (2023). Better Health Channel (Victoria State Government). https://www.betterhealth.vic.gov.au/health/healthyliving/gut-health
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Keeping a healthy gut. (2025). U.S. Department of Agriculture, Agricultural Research Service. https://www.ars.usda.gov/oc/utm/keeping-a-healthy-gut/
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Gut microbiome and health. (n.d.). Healthline. https://www.healthline.com/nutrition/gut-microbiome-and-health
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Gut check. (2023, Spring). Cleveland Clinic Magazine. https://magazine.clevelandclinic.org/2023-spring/gut-check
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The Medical Minute: Small changes make big differences in digestion. (2018). Penn State Health News. https://pennstatehealthnews.org/2018/03/the-medical-minute-small-changes-make-big-differences-in-digestion/
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Ferranti, E. (2014). 20 things you didn’t know about the human gut microbiome. EMBO Reports. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191858/
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Good vs. bad bacteria—Gut health. (2022). GoodRx. https://www.goodrx.com/well-being/gut-health/good-bad-bacteria-gut-health
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UMass Memorial Health. (n.d.). Dysbiosis: Your microbiome out of balance. https://www.ummhealth.org/simply-well/dysbiosis-your-microbiome-out-of-balance
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Northwestern Medicine. (n.d.). What does your gut microbiome have to do with your health? https://www.nm.org/healthbeat/healthy-tips/what-does-gut-microbiome-have-to-do-with-your-health
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Jimenez, A. (n.d.). Doctor of Chiropractic & Nurse Practitioner – Clinic resources. https://dralexjimenez.com/
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Jimenez, A. (2025). Professional profile and clinical insights. https://www.linkedin.com/in/dralexjimenez/
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The information herein on "Gut Health for Active Recovery: Key Benefits Explained" is not intended to replace a one-on-one relationship with a qualified health care professional or licensed physician and is not medical advice. We encourage you to make healthcare decisions based on your research and partnership with a qualified healthcare professional.
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Welcome to El Paso's Premier Wellness and Injury Care Clinic & wellness blog, where Dr. Alex Jimenez, DC, FNP-C, a board-certified Family Practice Nurse Practitioner (FNP-C) and Chiropractor (DC), presents insights on how our team is dedicated to holistic healing and personalized care. Our practice aligns with evidence-based treatment protocols inspired by integrative medicine principles, similar to those found on dralexjimenez.com, focusing on restoring health naturally for patients of all ages.
Our areas of chiropractic practice include Wellness & Nutrition, Chronic Pain, Personal Injury, Auto Accident Care, Work Injuries, Back Injury, Low Back Pain, Neck Pain, Migraine Headaches, Sports Injuries, Severe Sciatica, Scoliosis, Complex Herniated Discs, Fibromyalgia, Chronic Pain, Complex Injuries, Stress Management, Functional Medicine Treatments, and in-scope care protocols.
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Dr. Alex Jimenez DC, MSACP, APRN, FNP-BC*, CCST, IFMCP, CFMP, ATN
email: coach@elpasofunctionalmedicine.com
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Dr. Alex Jimenez, DC, APRN, FNP-BC*, CFMP, IFMCP, ATN, CCST
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